I finally got the timeline:
A more simple one is this:
This is a list based on these timelines:
I - Old Republic Era
000 - Knight Errant (25000 - 1000 BSW4)
010 - Tales of the Jedi - The Golden Age of the Sith (5000 BSW4)
020 - Tales of the Jedi - Fall of the Sith Empire (5000 BSW4)
030 - Tales of the Jedi - Knights of the Old Republic (4000 BSW4)
040 - Tales of the Jedi - Freedon Nadd Uprising (3998 BSW4)
050 - Tales of the Jedi - Dark Lords of the Sith (3997 BSW4)
060 - Tales of the Jedi - Sith War (3996 BSW4)
070 - Tales of the Jedi - Redemption (3986 BSW4)
080 - Knights of the Old Republic (3964 BSW4)
090 - Cold War (3953 BSW4)
091 - The Old Republic
100 - Tales of the Jedi - Jedi Vs Sith (1000 BSW4)
II - Rise of the Empire
000 - Jedi - The Dark Side (53 BSW4)
010 - Qui-Gon & Obi-Wan - Last Stand on Ord Mantel (38 BSW4)
011 - Qui-Gon & Obi-Wan - Aurorient Express (37 BSW4)
020 - Jedi Council - Acts of War (33.5 BSW4)
030 - Darth Maul (33 BSW4)
040 - Republic (32-0 BSW4)
050 - Episode I - Phantom Menace (32 BSW4)
051 - Episode I - Phantom Adventures (32 BSW4)
052 - Episode I - Phantom Menace Protagonists (32 BSW4)
053 - Episode I - Phantom Menace Manga (32 BSW4)
060 - The Bounty Hunters - Aurra Sing (32+ BSW4)
070 - Jedi Quest (28 BSW4)
080 - Jango Fett - Open Season (27 BSW4)
090 - Zam Wesell (27 BSW4)
100 - Starfigters (24 BSW4)
101 - Blood Ties (23 BSW4)
110 - Episode II - Attack Of The Clones (22 BSW4)
111 - Jedi (22 BSW4)
120 - Clones Wars Adventures (22-20 BSW4)
121 - Clone Wars (22-20 BSW4)
122 - The Clone Wars (22-20 BSW4)
130 - Obsession (20 BSW4)
140 - Free Comic Book Day 2005 Special (20 BSW4)
150 - General Grievous (20 BSW4)
160 - Episode III - Revenge of the Sith (19 BSW4)
161 - Episode III - Revenge of the Sith - Screenplay (19 BSW4)
162 - Visionaires (19 BSW4)
163 - Dark Times (19 BSW4)
164 - Darth Vader & the Lost Commando (19 BSW4)
170 - Purge (19 BSW4)
175 - The Force Unleashed (12 BSW4)
180 - Droids v1 (10-5 BSW4)
181 - Droids - Special (10-5 BSW4)
182 - Droids v2 (10-5 BSW4)
183 - Droids - The Protocol Offensive (10-5 BSW4)
200 - Jabba the Hutt - The Art of the Deal (5 BSW4)
210 - Classic Star Wars - Han Solo at Star's End (2 BSW4)
220 - Boba Fett - Salvage (2 BSW4)
230 - Boba Fett - Enemy of the Empire (1 BSW4)
240 - Underworld (1 BSW4)
250 - Empire (0 BSW4)
III - Rebellion
010 - Episode IV - A New Hope - Infinities (SW4)
011 - Episode IV - A New Hope - Marvel (SW4)
012 - Episode IV - A New Hope - Manga (SW4)
013 - Episode IV - A New Hope - Special Edition (SW4)
020 - Vaders Quest (0+ ASW4)
030 - The Early Adventures (0+ ASW4)
040 - River of Chaos (0+ ASW4)
050 - Classic Starwars (0-3 ASW4)
051 - Shadow Stalker (0-3 ASW4)
060 - Boba Fett - Overkill (1+ ASW4)
070 - Rebellion (1+ ASW4)
080 - Splinter of the Mind's Eye (2 ASW4)
081 - Princess Leia and the Royal Ransom (2 ASW4)
090 - Episode V - Empire Strikes Back (3 ASW4)
091 - Episode V - Empire Strikes Back - Manga (3 ASW4)
092 - Episode V - Empire Strikes Back - Infinities (3 ASW4)
093 - Star Wars Adventures (3 ASW4)
100 - Tales From Mos Eisley (3 ASW4)
101 - A Valentine Story (3 ASW4)
111 - Shadows of the Empire (3+ ASW4)
120 - The Bounty Hunters - Scoundrel's Wages (3+ ASW4)
130 - Episode VI - Return of the Jedi (4 ASW4)
131 - Episode VI - Return of the Jedi - Manga (4 ASW4)
132 - Episode VI - Return of the Jedi - Infinities (4 ASW4)
140 - Jabba The Hutt - The Jabba Tape (4 ASW4)
150 - Mara Jade - By The Emperor's Hand (4 ASW4)
160 - Shadows of the Empire - Evolution (4+ ASW4)
170 - Classic Star Wars - The Vandelhelm Mission (4+ ASW4)
180 - X-Wing Rogue Squadron (4+ ASW4)
IV - New Republic Era
010 - Boba Fett - Twin Engines Of Destruction (5 ASW4)
020 - Heir to the Empire (9 ASW4)
030 - Dark Force Rising (9 ASW4)
040 - Last Command (9 ASW4)
050 - Dark Empire I (10+ ASW4)
051 - Dark Empire II (10+ ASW4)
052 - The Starwars Handbook 3 - Dark Empire (10+ ASW4)
060 - Boba Fett - Death, Lies & Treachery (10+ ASW4)
070 - Boba Fett - Agent of Doom (10 ASW4)
080 - Empire's End (11 ASW4)
090 - Crimson Empire I (11+ ASW4)
091 - Crimson Empire II (11+ ASW4)
100 - Bounty Hunters - Kenix Kil (11+ ASW4)
110 - Jedi Academy - Leviathan (12 ASW4)
V - New Jedi Order
010 - Union (19 ASW4)
020 - Invasion - Refugees (25 ASW4)
021 - Invasion - Rescues (25 ASW4)
030 - Chewbacca (25 ASW4)
VI - Legacy Era
010 - Legacy (40+ ASW4)
020 - Legacy - War (138+ ASW4)
VII - Infinities
VIII - Specials
And finally, here is a zip file that contains an empty folder structure based on the above list: